| 1. Identity statement | ||||
| Reference Type | Conference Paper (Conference Proceedings) | |||
| Site | sibgrapi.sid.inpe.br | |||
| Holder Code | ibi 8JMKD3MGPEW34M/46T9EHH | |||
| Identifier | 8JMKD3MGPEW34M/4395EF2 | |||
| Repository | sid.inpe.br/sibgrapi/2020/09.15.23.42 | |||
| Last Update | 2020:09.15.23.42.37 (UTC) administrator | |||
| Metadata Repository | sid.inpe.br/sibgrapi/2020/09.15.23.42.37 | |||
| Metadata Last Update | 2022:06.14.00.00.04 (UTC) administrator | |||
| DOI | 10.1109/SIBGRAPI51738.2020.00049 | |||
| Citation Key | OliveiraPedrDias:2020:FuBLEn | |||
| Title | Fusion of BLAST and Ensemble of Classifiers for Protein Secondary Structure Prediction  | |||
| Format | On-line | |||
| Year | 2020 | |||
| Access Date | 2024, Sep. 07 | |||
| Number of Files | 1 | |||
| Size | 218 KiB | |||
| 2. Context | ||||
| Author | 1 Oliveira, Gabriel Bianchin de 2 Pedrini, Helio 3 Dias, Zanoni | |||
| Affiliation | 1 Institute of Computing, University of Campinas, Campinas, SP, Brazil, 13083-852 2 Institute of Computing, University of Campinas, Campinas, SP, Brazil, 13083-852 3 Institute of Computing, University of Campinas, Campinas, SP, Brazil, 13083-852 | |||
| Editor | Musse, Soraia Raupp Cesar Junior, Roberto Marcondes Pelechano, Nuria Wang, Zhangyang (Atlas) | |||
| e-Mail Address | helio@ic.unicamp.br | |||
| Conference Name | Conference on Graphics, Patterns and Images, 33 (SIBGRAPI) | |||
| Conference Location | Porto de Galinhas (virtual) | |||
| Date | 7-10 Nov. 2020 | |||
| Publisher | IEEE Computer Society | |||
| Publisher City | Los Alamitos | |||
| Book Title | Proceedings | |||
| Tertiary Type | Full Paper | |||
| History (UTC) | 2020-09-15 23:42:37 :: helio@ic.unicamp.br -> administrator :: 2022-06-14 00:00:04 :: administrator -> helio@ic.unicamp.br :: 2020 | |||
| 3. Content and structure | ||||
| Is the master or a copy? | is the master | |||
| Content Stage | completed | |||
| Transferable | 1 | |||
| Version Type | finaldraft | |||
| Keywords | Protein Structure Prediction Classifier Ensemble Amino Acid Sequence | |||
| Abstract | The prediction of protein secondary structure has great relevance in the analysis of global protein folding. In this work, we present a method for protein secondary structure prediction using the fusion of BLAST and the ensemble of local and global classifiers. We used the amino acid sequence and sequence similarity information available in the datasets and we explored other amino acid characteristics. In order to evaluate our method, we used the files from PDB (only from the year 2018), as well as CB6133 and CB513 datasets. We achieved 87.7%, 82.4% and 85.6% Q8 accuracy on PDB 2018, CB6133 and CB513 proteins using the amino acid sequence and amino acid biological properties, 84.7% and 87.5% Q8 accuracy on CB6133 and CB513 proteins using the amino acid sequence and similarity sequence information and 92.5% Q3 accuracy on PDB 2018 proteins using the amino acid sequence and amino acid biological properties. Our method presented competitive results using only BLAST and only the ensemble of classifiers. The fusion of both approaches achieved superior results compared to state-of-the-art approaches. | |||
| Arrangement 1 | urlib.net > SDLA > Fonds > SIBGRAPI 2020 > Fusion of BLAST... | |||
| Arrangement 2 | urlib.net > SDLA > Fonds > Full Index > Fusion of BLAST... | |||
| doc Directory Content | access | |||
| source Directory Content | there are no files | |||
| agreement Directory Content |
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| 4. Conditions of access and use | ||||
| data URL | http://sibgrapi.sid.inpe.br/ibi/8JMKD3MGPEW34M/4395EF2 | |||
| zipped data URL | http://sibgrapi.sid.inpe.br/zip/8JMKD3MGPEW34M/4395EF2 | |||
| Language | en | |||
| Target File | PID6614063.pdf | |||
| User Group | helio@ic.unicamp.br | |||
| Visibility | shown | |||
| Update Permission | not transferred | |||
| 5. Allied materials | ||||
| Mirror Repository | sid.inpe.br/banon/2001/03.30.15.38.24 | |||
| Next Higher Units | 8JMKD3MGPEW34M/43G4L9S 8JMKD3MGPEW34M/4742MCS | |||
| Citing Item List | sid.inpe.br/sibgrapi/2020/10.28.20.46 30 sid.inpe.br/sibgrapi/2022/06.10.21.49 3 sid.inpe.br/banon/2001/03.30.15.38.24 2 | |||
| Host Collection | sid.inpe.br/banon/2001/03.30.15.38 | |||
| 6. Notes | ||||
| Empty Fields | archivingpolicy archivist area callnumber contenttype copyholder copyright creatorhistory descriptionlevel dissemination edition electronicmailaddress group isbn issn label lineage mark nextedition notes numberofvolumes orcid organization pages parameterlist parentrepositories previousedition previouslowerunit progress project readergroup readpermission resumeid rightsholder schedulinginformation secondarydate secondarykey secondarymark secondarytype serieseditor session shorttitle sponsor subject tertiarymark type url volume | |||
| 7. Description control | ||||
| e-Mail (login) | helio@ic.unicamp.br | |||
| update | ||||